Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CIITAP33076 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 LINC01101-201ENST00000622953 1884 ntBASIC16.97■□□□□ 0.31
CIITAP33076 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 AL513477.1-201ENST00000602865 2407 ntBASIC16.97■□□□□ 0.31
CIITAP33076 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.97■□□□□ 0.31
CIITAP33076 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.97■□□□□ 0.31
CIITAP33076 HOMER2P2-201ENST00000451621 847 ntBASIC16.97■□□□□ 0.31
CIITAP33076 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 ALG3P1-201ENST00000508806 1114 ntBASIC16.97■□□□□ 0.31
CIITAP33076 AC131206.1-201ENST00000538078 1211 ntBASIC16.97■□□□□ 0.31
CIITAP33076 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.97■□□□□ 0.31
CIITAP33076 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.97■□□□□ 0.31
CIITAP33076 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.97■□□□□ 0.31
CIITAP33076 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CIITAP33076 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.97■□□□□ 0.31
CIITAP33076 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 AC144831.1-201ENST00000573312 2656 ntBASIC16.97■□□□□ 0.31
CIITAP33076 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 AC020910.5-201ENST00000623668 1865 ntBASIC16.97■□□□□ 0.31
CIITAP33076 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
CIITAP33076 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CIITAP33076 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.96■□□□□ 0.31
CIITAP33076 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
CIITAP33076 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.96■□□□□ 0.31
CIITAP33076 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.96■□□□□ 0.31
CIITAP33076 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.96■□□□□ 0.31
CIITAP33076 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CIITAP33076 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.96■□□□□ 0.31
CIITAP33076 PPY2P-201ENST00000582808 702 ntBASIC16.96■□□□□ 0.31
CIITAP33076 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.96■□□□□ 0.31
CIITAP33076 AC010328.2-201ENST00000597698 1111 ntBASIC16.96■□□□□ 0.31
CIITAP33076 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC16.96■□□□□ 0.31
CIITAP33076 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.96■□□□□ 0.31
CIITAP33076 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.96■□□□□ 0.31
CIITAP33076 AC009093.2-202ENST00000620513 2079 ntBASIC16.96■□□□□ 0.31
CIITAP33076 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.96■□□□□ 0.31
CIITAP33076 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CIITAP33076 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CIITAP33076 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
CIITAP33076 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.96■□□□□ 0.3
CIITAP33076 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CIITAP33076 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
CIITAP33076 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CIITAP33076 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.96■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms