Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A1P02462 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A1P02462 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A1P02462 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A1P02462 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A1P02462 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL4A1P02462 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 AC092135.3-201ENST00000624151 1846 ntBASIC18.05■□□□□ 0.48
COL4A1P02462 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
COL4A1P02462 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A1P02462 AL583805.1-201ENST00000391389 531 ntBASIC18.05■□□□□ 0.48
COL4A1P02462 AL355334.1-201ENST00000417713 215 ntBASIC18.05■□□□□ 0.48
COL4A1P02462 RPS9P1-201ENST00000419943 583 ntBASIC18.05■□□□□ 0.48
COL4A1P02462 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A1P02462 AP000358.1-201ENST00000456260 156 ntBASIC18.05■□□□□ 0.48
COL4A1P02462 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A1P02462 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
COL4A1P02462 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A1P02462 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A1P02462 MVK-217ENST00000639206 367 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A1P02462 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
COL4A1P02462 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A1P02462 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A1P02462 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A1P02462 AGAP7P-201ENST00000582299 2062 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 AGAP14-201ENST00000624701 2060 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A1P02462 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A1P02462 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
COL4A1P02462 AL136172.1-201ENST00000598590 1394 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL4A1P02462 AP000356.3-201ENST00000382243 753 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A1P02462 PFN2-206ENST00000461930 606 ntTSL 4 BASIC18.04■□□□□ 0.48
COL4A1P02462 RPL18AP3-201ENST00000462885 528 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC18.04■□□□□ 0.48
COL4A1P02462 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A1P02462 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC18.04■□□□□ 0.48
COL4A1P02462 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 AC005632.3-201ENST00000605544 308 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
COL4A1P02462 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC18.04■□□□□ 0.48
COL4A1P02462 AL353726.2-201ENST00000623259 884 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.04■□□□□ 0.48
COL4A1P02462 AC139712.1-201ENST00000378256 1875 ntBASIC18.04■□□□□ 0.48
COL4A1P02462 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL4A1P02462 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC18.04■□□□□ 0.48
COL4A1P02462 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL4A1P02462 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A1P02462 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC18.03■□□□□ 0.48
COL4A1P02462 FAM90A2P-201ENST00000511144 1395 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 FAM90A25P-201ENST00000528404 1395 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 MRPL37P1-201ENST00000592451 1337 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 AC074138.1-201ENST00000611182 1303 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 JTB-202ENST00000356648 1040 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A1P02462 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 TSPY25P-201ENST00000429463 745 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
COL4A1P02462 MIR3188-201ENST00000583494 85 ntBASIC18.03■□□□□ 0.48
COL4A1P02462 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC18.03■□□□□ 0.48
COL4A1P02462 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
COL4A1P02462 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC18.03■□□□□ 0.48
COL4A1P02462 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL4A1P02462 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL4A1P02462 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC18.03■□□□□ 0.48
COL4A1P02462 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms