Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
COL3A1P02461 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
COL3A1P02461 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 BCYRN1-201ENST00000418539 200 ntBASIC19.59■□□□□ 0.73
COL3A1P02461 AC104073.2-201ENST00000453737 312 ntBASIC19.59■□□□□ 0.73
COL3A1P02461 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC19.59■□□□□ 0.73
COL3A1P02461 OARD1-204ENST00000464633 717 ntTSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 ARTN-209ENST00000479128 471 ntTSL 3 BASIC19.59■□□□□ 0.73
COL3A1P02461 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.59■□□□□ 0.73
COL3A1P02461 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 NDUFV2P1-201ENST00000596415 907 ntBASIC19.59■□□□□ 0.73
COL3A1P02461 AC133540.1-201ENST00000620845 1019 ntBASIC19.59■□□□□ 0.73
COL3A1P02461 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC19.59■□□□□ 0.73
COL3A1P02461 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.59■□□□□ 0.73
COL3A1P02461 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL3A1P02461 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.59■□□□□ 0.73
COL3A1P02461 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL3A1P02461 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL3A1P02461 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC19.58■□□□□ 0.73
COL3A1P02461 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL3A1P02461 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL3A1P02461 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL3A1P02461 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL3A1P02461 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC19.58■□□□□ 0.73
COL3A1P02461 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL3A1P02461 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC19.58■□□□□ 0.72
COL3A1P02461 FES-203ENST00000394302 2133 ntTSL 5 BASIC19.58■□□□□ 0.72
COL3A1P02461 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.58■□□□□ 0.72
COL3A1P02461 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC19.58■□□□□ 0.72
COL3A1P02461 IGHJ2P-201ENST00000454480 60 ntBASIC19.58■□□□□ 0.72
COL3A1P02461 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.58■□□□□ 0.72
COL3A1P02461 AC005740.2-201ENST00000511085 419 ntBASIC19.58■□□□□ 0.72
COL3A1P02461 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.58■□□□□ 0.72
COL3A1P02461 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC19.58■□□□□ 0.72
COL3A1P02461 RN7SL574P-201ENST00000581512 297 ntBASIC19.58■□□□□ 0.72
COL3A1P02461 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC19.58■□□□□ 0.72
COL3A1P02461 AC008805.1-201ENST00000590892 364 ntBASIC19.58■□□□□ 0.72
COL3A1P02461 SNX12-206ENST00000622259 661 ntTSL 5 BASIC19.58■□□□□ 0.72
COL3A1P02461 CDK7-214ENST00000626796 358 ntTSL 5 BASIC19.58■□□□□ 0.72
COL3A1P02461 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC19.58■□□□□ 0.72
COL3A1P02461 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 AL390755.1-201ENST00000623716 2027 ntBASIC19.58■□□□□ 0.72
COL3A1P02461 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
COL3A1P02461 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
COL3A1P02461 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
COL3A1P02461 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL3A1P02461 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 AC008132.1-202ENST00000342005 1389 ntBASIC19.57■□□□□ 0.72
COL3A1P02461 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
COL3A1P02461 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL3A1P02461 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL3A1P02461 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC19.57■□□□□ 0.72
COL3A1P02461 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
COL3A1P02461 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 AL035414.1-201ENST00000451327 857 ntBASIC19.57■□□□□ 0.72
COL3A1P02461 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL3A1P02461 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC19.57■□□□□ 0.72
COL3A1P02461 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC19.57■□□□□ 0.72
COL3A1P02461 RBM8B-201ENST00000555532 525 ntBASIC19.57■□□□□ 0.72
COL3A1P02461 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
COL3A1P02461 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC19.57■□□□□ 0.72
COL3A1P02461 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC19.57■□□□□ 0.72
COL3A1P02461 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC19.57■□□□□ 0.72
COL3A1P02461 AF254983.2-201ENST00000612331 135 ntBASIC19.57■□□□□ 0.72
COL3A1P02461 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC19.57■□□□□ 0.72
COL3A1P02461 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
COL3A1P02461 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms