Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC18■□□□□ 0.47
MBD4O95243 MIR4683-201ENST00000579659 81 ntBASIC18■□□□□ 0.47
MBD4O95243 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC18■□□□□ 0.47
MBD4O95243 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
MBD4O95243 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
MBD4O95243 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC18■□□□□ 0.47
MBD4O95243 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MBD4O95243 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC18■□□□□ 0.47
MBD4O95243 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC18■□□□□ 0.47
MBD4O95243 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
MBD4O95243 AP002414.2-201ENST00000591780 3365 ntBASIC18■□□□□ 0.47
MBD4O95243 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC18■□□□□ 0.47
MBD4O95243 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MBD4O95243 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MBD4O95243 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
MBD4O95243 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 AP000593.2-201ENST00000542775 1433 ntBASIC17.99■□□□□ 0.47
MBD4O95243 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
MBD4O95243 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
MBD4O95243 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 AL023775.1-201ENST00000454907 1746 ntBASIC17.99■□□□□ 0.47
MBD4O95243 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.99■□□□□ 0.47
MBD4O95243 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 RN7SKP175-201ENST00000408472 289 ntBASIC17.99■□□□□ 0.47
MBD4O95243 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC17.99■□□□□ 0.47
MBD4O95243 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
MBD4O95243 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC17.99■□□□□ 0.47
MBD4O95243 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 EEF1DP1-201ENST00000585891 896 ntBASIC17.99■□□□□ 0.47
MBD4O95243 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC17.99■□□□□ 0.47
MBD4O95243 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MBD4O95243 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MBD4O95243 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
MBD4O95243 AL138725.1-201ENST00000407347 1314 ntBASIC17.98■□□□□ 0.47
MBD4O95243 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.98■□□□□ 0.47
MBD4O95243 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.98■□□□□ 0.47
MBD4O95243 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 MIR326-201ENST00000362220 95 ntBASIC17.98■□□□□ 0.47
MBD4O95243 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 AC004945.1-201ENST00000416738 983 ntBASIC17.98■□□□□ 0.47
MBD4O95243 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.98■□□□□ 0.47
MBD4O95243 ACTBP11-201ENST00000436287 1126 ntBASIC17.98■□□□□ 0.47
MBD4O95243 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 GOLGA2P4-201ENST00000441462 777 ntBASIC17.98■□□□□ 0.47
MBD4O95243 Z93015.1-201ENST00000451718 390 ntBASIC17.98■□□□□ 0.47
MBD4O95243 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.98■□□□□ 0.47
MBD4O95243 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
MBD4O95243 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.98■□□□□ 0.47
MBD4O95243 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.98■□□□□ 0.47
MBD4O95243 MIR4538-201ENST00000581377 78 ntBASIC17.98■□□□□ 0.47
MBD4O95243 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.98■□□□□ 0.47
MBD4O95243 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.98■□□□□ 0.47
MBD4O95243 AC003102.2-201ENST00000589195 1469 ntBASIC17.98■□□□□ 0.47
MBD4O95243 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
MBD4O95243 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.98■□□□□ 0.47
MBD4O95243 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MBD4O95243 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms