Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MIR4783-201ENST00000580343 82 ntBASIC15.34■□□□□ 0.05
HOXC11O43248 BNIP3P13-201ENST00000599968 566 ntBASIC15.34■□□□□ 0.05
HOXC11O43248 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.34■□□□□ 0.05
HOXC11O43248 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC11O43248 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.34■□□□□ 0.05
HOXC11O43248 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC11O43248 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC11O43248 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.34■□□□□ 0.05
HOXC11O43248 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.34■□□□□ 0.05
HOXC11O43248 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
HOXC11O43248 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.34■□□□□ 0.05
HOXC11O43248 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HOXC11O43248 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.33■□□□□ 0.05
HOXC11O43248 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.33■□□□□ 0.05
HOXC11O43248 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
HOXC11O43248 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.33■□□□□ 0.04
HOXC11O43248 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.33■□□□□ 0.04
HOXC11O43248 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 DPM3-202ENST00000368399 517 ntBASIC15.33■□□□□ 0.04
HOXC11O43248 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.33■□□□□ 0.04
HOXC11O43248 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 AL008707.1-201ENST00000422498 534 ntBASIC15.33■□□□□ 0.04
HOXC11O43248 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC15.33■□□□□ 0.04
HOXC11O43248 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 AC005740.2-201ENST00000511085 419 ntBASIC15.33■□□□□ 0.04
HOXC11O43248 AL021578.1-201ENST00000613646 709 ntBASIC15.33■□□□□ 0.04
HOXC11O43248 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.33■□□□□ 0.04
HOXC11O43248 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 AC020910.5-201ENST00000623668 1865 ntBASIC15.33■□□□□ 0.04
HOXC11O43248 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.33■□□□□ 0.04
HOXC11O43248 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 AC023024.2-201ENST00000623561 1993 ntBASIC15.33■□□□□ 0.04
HOXC11O43248 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.33■□□□□ 0.04
HOXC11O43248 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
HOXC11O43248 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HOXC11O43248 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
HOXC11O43248 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
HOXC11O43248 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC11O43248 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.32■□□□□ 0.04
HOXC11O43248 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.32■□□□□ 0.04
HOXC11O43248 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 DEF8-202ENST00000418391 852 ntTSL 2 BASIC15.32■□□□□ 0.04
HOXC11O43248 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 AC106794.1-201ENST00000506935 792 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC11O43248 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.32■□□□□ 0.04
HOXC11O43248 DUX4L46-201ENST00000566845 751 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 MIR3619-201ENST00000579667 83 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 AC005324.6-201ENST00000587972 613 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HOXC11O43248 AC008825.2-201ENST00000603374 718 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 AC106872.11-201ENST00000605838 421 ntBASIC15.32■□□□□ 0.04
HOXC11O43248 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms