Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC007278.1-201ENST00000450893 1327 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH5O43196 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH5O43196 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
MSH5O43196 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH5O43196 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH5O43196 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 PKD1P1-201ENST00000458669 6805 ntBASIC21.47■■□□□ 1.03
MSH5O43196 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH5O43196 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
MSH5O43196 MDH1-202ENST00000409476 808 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 MDH1-203ENST00000409908 700 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 MIR1909-201ENST00000411312 80 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AL663109.1-201ENST00000411498 844 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH5O43196 MTCO2P7-201ENST00000446518 666 ntBASIC21.47■■□□□ 1.03
MSH5O43196 ZNF736P6Y-201ENST00000447526 1213 ntBASIC21.47■■□□□ 1.03
MSH5O43196 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 AL365203.1-201ENST00000450890 1048 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 INE1-201ENST00000456273 945 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AC105391.1-201ENST00000503155 1045 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AC116337.3-201ENST00000505200 846 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 EEF1A1P37-201ENST00000522748 715 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AC021820.1-201ENST00000525564 808 ntBASIC21.47■■□□□ 1.03
MSH5O43196 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH5O43196 AL138918.1-201ENST00000568306 659 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AC140912.1-201ENST00000577171 1054 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AC108865.2-201ENST00000606881 432 ntBASIC21.47■■□□□ 1.03
MSH5O43196 AC010245.2-201ENST00000606908 1167 ntBASIC21.47■■□□□ 1.03
MSH5O43196 PIBF1-207ENST00000615625 1098 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 HR-201ENST00000312841 5351 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
MSH5O43196 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH5O43196 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH5O43196 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH5O43196 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH5O43196 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 TMEM59-203ENST00000371341 1116 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 AL390835.1-201ENST00000413941 901 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 LINC00331-201ENST00000446391 376 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 AL500527.1-201ENST00000448532 255 ntBASIC21.46■■□□□ 1.03
MSH5O43196 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC21.46■■□□□ 1.03
MSH5O43196 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 MTND2P17-201ENST00000550281 688 ntBASIC21.46■■□□□ 1.03
MSH5O43196 AC012442.3-201ENST00000636053 940 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 AC016027.1-202ENST00000607927 1699 ntBASIC21.46■■□□□ 1.03
MSH5O43196 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH5O43196 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH5O43196 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH5O43196 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms