Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
SDCBPO00560 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
SDCBPO00560 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.97□□□□□ -0.33
SDCBPO00560 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.97□□□□□ -0.33
SDCBPO00560 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.97□□□□□ -0.33
SDCBPO00560 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
SDCBPO00560 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
SDCBPO00560 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
SDCBPO00560 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 GHSR-202ENST00000427970 912 ntBASIC12.97□□□□□ -0.33
SDCBPO00560 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.97□□□□□ -0.33
SDCBPO00560 PPP6R2P1-201ENST00000450880 1275 ntBASIC12.97□□□□□ -0.33
SDCBPO00560 AC125807.1-201ENST00000483097 614 ntBASIC12.97□□□□□ -0.33
SDCBPO00560 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.97□□□□□ -0.33
SDCBPO00560 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
SDCBPO00560 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.97□□□□□ -0.33
SDCBPO00560 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC12.97□□□□□ -0.33
SDCBPO00560 AC025678.2-201ENST00000562061 970 ntBASIC12.97□□□□□ -0.33
SDCBPO00560 WDR88-203ENST00000592765 651 ntTSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 Z92544.3-201ENST00000624747 417 ntBASIC12.97□□□□□ -0.33
SDCBPO00560 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 HSPA7-201ENST00000445535 1927 ntBASIC12.97□□□□□ -0.33
SDCBPO00560 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC12.97□□□□□ -0.33
SDCBPO00560 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SDCBPO00560 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC12.97□□□□□ -0.33
SDCBPO00560 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 SF1-209ENST00000433274 2317 ntTSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
SDCBPO00560 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
SDCBPO00560 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
SDCBPO00560 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 AC136759.1-202ENST00000530858 2194 ntBASIC12.96□□□□□ -0.33
SDCBPO00560 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
SDCBPO00560 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
SDCBPO00560 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 AL080243.2-201ENST00000418783 582 ntBASIC12.96□□□□□ -0.33
SDCBPO00560 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC12.96□□□□□ -0.33
SDCBPO00560 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.96□□□□□ -0.33
SDCBPO00560 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.96□□□□□ -0.33
SDCBPO00560 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC12.96□□□□□ -0.33
SDCBPO00560 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SDCBPO00560 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
SDCBPO00560 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
SDCBPO00560 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.96□□□□□ -0.34
SDCBPO00560 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
SDCBPO00560 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
SDCBPO00560 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms