Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AL390955.2-201ENST00000603032 514 ntBASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AC107373.2-201ENST00000607735 490 ntBASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HIF3AQ9Y2N7 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AL157414.3-201ENST00000624276 1954 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AL512638.1-201ENST00000457493 794 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 RN7SL399P-201ENST00000471648 279 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 RRP7BP-205ENST00000566851 833 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AL049840.4-201ENST00000602422 811 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AC004790.1-201ENST00000612686 536 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AL138799.1-201ENST00000448213 1675 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AC026748.1-201ENST00000624349 3251 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 AL158070.2-201ENST00000623713 1621 ntBASIC13.72□□□□□ -0.21
HIF3AQ9Y2N7 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.71□□□□□ -0.21
HIF3AQ9Y2N7 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms