Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AC084364.1-201ENST00000551967 1556 ntBASIC14.78□□□□□ -0.04
VPS4AQ9UN37 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 SPDYE17-201ENST00000412399 783 ntBASIC14.78□□□□□ -0.04
VPS4AQ9UN37 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AC068587.10-201ENST00000641210 219 ntBASIC14.78□□□□□ -0.04
VPS4AQ9UN37 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AL122018.1-201ENST00000446607 2310 ntBASIC14.78□□□□□ -0.04
VPS4AQ9UN37 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 AC117489.1-201ENST00000625169 3217 ntBASIC14.78□□□□□ -0.04
VPS4AQ9UN37 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 ZBED1P1-201ENST00000502364 1930 ntBASIC14.78□□□□□ -0.04
VPS4AQ9UN37 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
VPS4AQ9UN37 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.77□□□□□ -0.04
VPS4AQ9UN37 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
VPS4AQ9UN37 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 KRT43P-201ENST00000434019 910 ntBASIC14.77□□□□□ -0.05
VPS4AQ9UN37 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AC104989.1-201ENST00000519711 778 ntBASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AC123567.1-201ENST00000548294 1261 ntBASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AC044860.1-202ENST00000559481 777 ntBASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 MIR4259-201ENST00000584466 101 ntBASIC14.77□□□□□ -0.05
VPS4AQ9UN37 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AL133215.2-201ENST00000609242 977 ntBASIC14.77□□□□□ -0.05
VPS4AQ9UN37 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS4AQ9UN37 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms