Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM4Q9ULL8 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 PGR-210ENST00000619228 3038 ntTSL 5 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 RN7SL258P-201ENST00000478664 300 ntBASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 AL157792.1-201ENST00000488281 530 ntBASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 AP002803.1-201ENST00000528836 498 ntBASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 SNORD3B-2-202ENST00000571722 791 ntBASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 MIR6842-201ENST00000612539 65 ntBASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM4Q9ULL8 RPL7P35-201ENST00000446943 740 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 HLA-J-204ENST00000495278 958 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 MESTP3-201ENST00000503460 968 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 RPL17P45-201ENST00000586289 509 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 AC127024.7-201ENST00000625101 200 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 CELP-203ENST00000624767 2414 ntTSL 5 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 AC023024.2-201ENST00000623561 1993 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 RN7SKP175-201ENST00000408472 289 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 FAM58BP-201ENST00000439056 645 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 VDAC1P1-201ENST00000439229 848 ntBASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC28.4■■■□□ 2.14
SHROOM4Q9ULL8 REXO1L2P-201ENST00000425429 2069 ntBASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 STRN-202ENST00000379213 2254 ntTSL 5 BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 FKBP4P6-201ENST00000457486 1332 ntBASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM4Q9ULL8 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 PAM16-211ENST00000575848 518 ntTSL 3 BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 MIR3677-201ENST00000578964 60 ntBASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 AL358472.3-201ENST00000608147 415 ntBASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 MEG3_2.1-201ENST00000611456 105 ntBASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
SHROOM4Q9ULL8 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms