Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 ANKRD26P3-201ENST00000454044 2748 ntBASIC19.45■□□□□ 0.7
SMC4Q9NTJ3 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 PTP4A1P2-201ENST00000546033 454 ntBASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 AC132938.2-201ENST00000579188 680 ntBASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 CECR7-204ENST00000609932 568 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 AL591163.1-201ENST00000641757 987 ntBASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 AC134312.5-201ENST00000568031 1313 ntBASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMC4Q9NTJ3 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 BAATP1-201ENST00000412284 1225 ntBASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 COX5BP8-201ENST00000416911 349 ntBASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 TMEM14DP-201ENST00000422205 345 ntBASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 COX20P2-201ENST00000452636 358 ntBASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 IGHV3-72-202ENST00000621503 303 ntBASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 AL358472.5-202ENST00000641448 1267 ntBASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 AC105233.6-201ENST00000642093 218 ntBASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMC4Q9NTJ3 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms