Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 GPR53P-205ENST00000457298 1084 ntBASIC13.67□□□□□ -0.22
CPNE4Q96A23 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 AC018665.1-201ENST00000622927 1362 ntBASIC13.67□□□□□ -0.22
CPNE4Q96A23 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 AL009178.2-201ENST00000597278 2719 ntBASIC13.67□□□□□ -0.22
CPNE4Q96A23 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CPNE4Q96A23 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CPNE4Q96A23 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AL109954.1-202ENST00000564051 2148 ntBASIC13.66□□□□□ -0.22
CPNE4Q96A23 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 C2orf27AP3-201ENST00000434123 579 ntBASIC13.66□□□□□ -0.22
CPNE4Q96A23 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AC234783.1-201ENST00000441761 496 ntBASIC13.66□□□□□ -0.22
CPNE4Q96A23 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AL354718.3-201ENST00000616414 581 ntBASIC13.66□□□□□ -0.22
CPNE4Q96A23 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 CR382287.1-201ENST00000623954 586 ntBASIC13.66□□□□□ -0.22
CPNE4Q96A23 AC138035.3-201ENST00000622706 2791 ntBASIC13.66□□□□□ -0.22
CPNE4Q96A23 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 MSTO2P-201ENST00000314835 1709 ntBASIC13.66□□□□□ -0.22
CPNE4Q96A23 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CPNE4Q96A23 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.66□□□□□ -0.22
CPNE4Q96A23 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 AL360270.3-201ENST00000609118 1348 ntBASIC13.65□□□□□ -0.22
CPNE4Q96A23 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CPNE4Q96A23 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
CPNE4Q96A23 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms