Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 AC232323.1-201ENST00000540724 2099 ntBASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 MIR1202-201ENST00000408529 83 ntBASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 AC108725.1-201ENST00000495472 409 ntBASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 MIR6869-201ENST00000619434 62 ntBASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 KRT8P35-201ENST00000483942 1338 ntBASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.41■□□□□ 0.06
SHROOM3Q8TF72 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 RHOQP1-201ENST00000555758 579 ntBASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 AC244093.1-201ENST00000610837 814 ntBASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SHROOM3Q8TF72 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 CLUHP2-201ENST00000426660 1303 ntBASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 PDIA3P1-201ENST00000471856 1510 ntBASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.39■□□□□ 0.05
SHROOM3Q8TF72 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms