Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 Z82170.1-201ENST00000625081 3192 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AC015922.1-201ENST00000421102 1152 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 KLF2P3-201ENST00000451977 1087 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 RN7SL618P-201ENST00000477850 296 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AC069120.2-201ENST00000524091 540 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AC027369.6-201ENST00000525520 931 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AC079781.4-201ENST00000641908 219 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 INTS4P1-203ENST00000641008 3683 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AC027601.5-201ENST00000624065 2482 ntBASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
CLIP4Q8N3C7 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 AC093028.1-201ENST00000622998 982 ntBASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.31□□□□□ -0.12
CLIP4Q8N3C7 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 AL139385.1-201ENST00000611744 3272 ntBASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CLIP4Q8N3C7 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms