Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 RBM8B-201ENST00000555532 525 ntBASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 MIR4649-201ENST00000582839 64 ntBASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 MIR3188-201ENST00000583494 85 ntBASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AC007881.3-201ENST00000608897 607 ntBASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AC009084.3-201ENST00000623356 437 ntBASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AC090616.6-203ENST00000579186 1945 ntBASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.07■□□□□ 0.16
CNKSR3Q6P9H4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 MBP-201ENST00000354542 575 ntTSL 2 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 AL583805.1-201ENST00000391389 531 ntBASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 AL627389.1-201ENST00000413508 1182 ntBASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.06■□□□□ 0.16
CNKSR3Q6P9H4 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 AC015909.3-201ENST00000572855 1794 ntBASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 AC025271.4-201ENST00000621477 1726 ntBASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 LINC01165-201ENST00000445190 1623 ntBASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 KRT18P9-201ENST00000604826 1300 ntBASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CNKSR3Q6P9H4 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms