Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AGGF1P1-201ENST00000509500 2073 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC10.53□□□□□ -0.72
PRKDCP78527 AL121949.1-201ENST00000402043 968 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 HMGA1P2-201ENST00000430198 324 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 PTPA-215ENST00000432124 567 ntTSL 4 BASIC10.53□□□□□ -0.72
PRKDCP78527 DUX4L50-201ENST00000455245 715 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC10.53□□□□□ -0.72
PRKDCP78527 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC10.53□□□□□ -0.72
PRKDCP78527 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 AC023090.2-201ENST00000625182 2110 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 ILF3-AS1-201ENST00000591501 1983 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 SIRPB3P-201ENST00000340424 1216 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 OR51A9P-201ENST00000422578 911 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 PPP1R2P4-201ENST00000424051 595 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 AC106782.5-201ENST00000616011 337 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC10.53□□□□□ -0.72
PRKDCP78527 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC10.52□□□□□ -0.72
PRKDCP78527 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
PRKDCP78527 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
PRKDCP78527 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC10.52□□□□□ -0.72
PRKDCP78527 AC008026.2-201ENST00000495438 348 ntBASIC10.52□□□□□ -0.72
PRKDCP78527 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC10.52□□□□□ -0.72
PRKDCP78527 AP000920.1-201ENST00000531824 344 ntBASIC10.52□□□□□ -0.72
PRKDCP78527 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC10.52□□□□□ -0.72
PRKDCP78527 SRP14-208ENST00000560773 468 ntTSL 3 BASIC10.52□□□□□ -0.72
PRKDCP78527 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.72
PRKDCP78527 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC10.52□□□□□ -0.72
PRKDCP78527 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.72
PRKDCP78527 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.72
PRKDCP78527 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
PRKDCP78527 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC10.52□□□□□ -0.72
PRKDCP78527 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
PRKDCP78527 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 HNRNPA1P27-201ENST00000412087 955 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 AL627095.1-201ENST00000414775 321 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC10.52□□□□□ -0.73
PRKDCP78527 DLK1-205ENST00000556051 469 ntTSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 CES1P2-201ENST00000566467 1242 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC10.52□□□□□ -0.73
PRKDCP78527 AC138627.1-201ENST00000641127 1257 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
PRKDCP78527 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC10.52□□□□□ -0.73
PRKDCP78527 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 AL136172.1-201ENST00000598590 1394 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 OR7E12P-201ENST00000344740 973 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 MED15P3-201ENST00000413613 326 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 AL954722.1-201ENST00000431238 259 ntBASIC10.52□□□□□ -0.73
PRKDCP78527 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC10.52□□□□□ -0.73
PRKDCP78527 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC10.52□□□□□ -0.73
PRKDCP78527 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC10.52□□□□□ -0.73
PRKDCP78527 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
PRKDCP78527 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
PRKDCP78527 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
PRKDCP78527 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
PRKDCP78527 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC10.52□□□□□ -0.73
PRKDCP78527 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC10.52□□□□□ -0.73
PRKDCP78527 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC10.52□□□□□ -0.73
PRKDCP78527 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC10.52□□□□□ -0.73
PRKDCP78527 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC10.52□□□□□ -0.73
PRKDCP78527 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC10.52□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms