Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.09■□□□□ 0.33
CCNA1P78396 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.09■□□□□ 0.33
CCNA1P78396 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCNA1P78396 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
CCNA1P78396 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCNA1P78396 RPL17P11-201ENST00000417593 544 ntBASIC17.09■□□□□ 0.33
CCNA1P78396 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC17.09■□□□□ 0.33
CCNA1P78396 LY6E-208ENST00000520531 490 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.09■□□□□ 0.33
CCNA1P78396 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC17.09■□□□□ 0.33
CCNA1P78396 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCNA1P78396 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.08■□□□□ 0.33
CCNA1P78396 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCNA1P78396 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCNA1P78396 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCNA1P78396 PRAL-201ENST00000624952 3286 ntBASIC17.08■□□□□ 0.33
CCNA1P78396 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CCNA1P78396 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
CCNA1P78396 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCNA1P78396 MBLAC2-202ENST00000514906 1936 ntBASIC17.08■□□□□ 0.33
CCNA1P78396 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.08■□□□□ 0.33
CCNA1P78396 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.08■□□□□ 0.32
CCNA1P78396 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 FAM90A7P-201ENST00000382628 1395 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 FAM90A23P-201ENST00000400136 1395 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 AC026316.1-201ENST00000398900 414 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.08■□□□□ 0.32
CCNA1P78396 AC069218.1-201ENST00000435269 762 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 KLF2P1-201ENST00000447438 1042 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 NOC2LP1-201ENST00000450578 752 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 ALG3P1-201ENST00000508806 1114 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.08■□□□□ 0.32
CCNA1P78396 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC17.08■□□□□ 0.32
CCNA1P78396 MIR4754-201ENST00000582477 89 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.08■□□□□ 0.32
CCNA1P78396 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC17.08■□□□□ 0.32
CCNA1P78396 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.08■□□□□ 0.32
CCNA1P78396 AC103691.2-201ENST00000618824 433 ntBASIC17.08■□□□□ 0.32
CCNA1P78396 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCNA1P78396 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
CCNA1P78396 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.08■□□□□ 0.32
CCNA1P78396 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.08■□□□□ 0.32
CCNA1P78396 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCNA1P78396 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCNA1P78396 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CCNA1P78396 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.07■□□□□ 0.32
CCNA1P78396 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.07■□□□□ 0.32
CCNA1P78396 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC17.07■□□□□ 0.32
CCNA1P78396 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.07■□□□□ 0.32
CCNA1P78396 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.07■□□□□ 0.32
CCNA1P78396 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC17.07■□□□□ 0.32
CCNA1P78396 AC092978.1-202ENST00000637590 1327 ntBASIC17.07■□□□□ 0.32
CCNA1P78396 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.07■□□□□ 0.32
CCNA1P78396 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 AC239868.1-201ENST00000369385 493 ntBASIC17.07■□□□□ 0.32
CCNA1P78396 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCNA1P78396 AC078875.1-201ENST00000431907 724 ntBASIC17.07■□□□□ 0.32
CCNA1P78396 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms