Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.4□□□□□ -0.1
LIM2P55344 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
LIM2P55344 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.4□□□□□ -0.1
LIM2P55344 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC14.4□□□□□ -0.1
LIM2P55344 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 PTP4A1P2-201ENST00000546033 454 ntBASIC14.4□□□□□ -0.1
LIM2P55344 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.4□□□□□ -0.1
LIM2P55344 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.4□□□□□ -0.1
LIM2P55344 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
LIM2P55344 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
LIM2P55344 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.4□□□□□ -0.11
LIM2P55344 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.4□□□□□ -0.11
LIM2P55344 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.39□□□□□ -0.11
LIM2P55344 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 CICP14-201ENST00000629111 2732 ntBASIC14.39□□□□□ -0.11
LIM2P55344 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.39□□□□□ -0.11
LIM2P55344 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 MGST3-203ENST00000367885 680 ntTSL 2 BASIC14.39□□□□□ -0.11
LIM2P55344 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 ACTBP8-201ENST00000403258 1108 ntBASIC14.39□□□□□ -0.11
LIM2P55344 BAATP1-201ENST00000412284 1225 ntBASIC14.39□□□□□ -0.11
LIM2P55344 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.39□□□□□ -0.11
LIM2P55344 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.39□□□□□ -0.11
LIM2P55344 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.39□□□□□ -0.11
LIM2P55344 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.39□□□□□ -0.11
LIM2P55344 AC012441.1-201ENST00000446669 685 ntBASIC14.39□□□□□ -0.11
LIM2P55344 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.39□□□□□ -0.11
LIM2P55344 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 AC012645.4-201ENST00000610691 1061 ntBASIC14.39□□□□□ -0.11
LIM2P55344 IGHV3-72-202ENST00000621503 303 ntBASIC14.39□□□□□ -0.11
LIM2P55344 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LIM2P55344 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 AL137783.1-201ENST00000623494 1896 ntBASIC14.39□□□□□ -0.11
LIM2P55344 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.39□□□□□ -0.11
LIM2P55344 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 KRT8P35-201ENST00000483942 1338 ntBASIC14.39□□□□□ -0.11
LIM2P55344 AC134312.5-201ENST00000568031 1313 ntBASIC14.39□□□□□ -0.11
LIM2P55344 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LIM2P55344 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
LIM2P55344 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.38□□□□□ -0.11
LIM2P55344 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LIM2P55344 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 175.5 ms