Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17■□□□□ 0.31
CIITAP33076 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 POR-201ENST00000394893 2532 ntTSL 5 BASIC17■□□□□ 0.31
CIITAP33076 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CIITAP33076 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 AC004945.1-201ENST00000416738 983 ntBASIC17■□□□□ 0.31
CIITAP33076 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17■□□□□ 0.31
CIITAP33076 AC007969.1-201ENST00000433675 447 ntBASIC17■□□□□ 0.31
CIITAP33076 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17■□□□□ 0.31
CIITAP33076 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17■□□□□ 0.31
CIITAP33076 HNRNPA1P48-202ENST00000565308 961 ntBASIC17■□□□□ 0.31
CIITAP33076 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17■□□□□ 0.31
CIITAP33076 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17■□□□□ 0.31
CIITAP33076 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CIITAP33076 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.99■□□□□ 0.31
CIITAP33076 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.99■□□□□ 0.31
CIITAP33076 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 FAM21FP-201ENST00000426241 1131 ntBASIC16.99■□□□□ 0.31
CIITAP33076 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 CHMP1AP1-201ENST00000445563 662 ntBASIC16.99■□□□□ 0.31
CIITAP33076 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.99■□□□□ 0.31
CIITAP33076 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.99■□□□□ 0.31
CIITAP33076 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.99■□□□□ 0.31
CIITAP33076 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 ZACNP1-201ENST00000612259 710 ntBASIC16.99■□□□□ 0.31
CIITAP33076 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CIITAP33076 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.99■□□□□ 0.31
CIITAP33076 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.99■□□□□ 0.31
CIITAP33076 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.99■□□□□ 0.31
CIITAP33076 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CIITAP33076 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC16.99■□□□□ 0.31
CIITAP33076 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CIITAP33076 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.98■□□□□ 0.31
CIITAP33076 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.98■□□□□ 0.31
CIITAP33076 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 TUBB1P2-201ENST00000422712 1306 ntBASIC16.98■□□□□ 0.31
CIITAP33076 TUBB1P1-201ENST00000503144 1300 ntBASIC16.98■□□□□ 0.31
CIITAP33076 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.98■□□□□ 0.31
CIITAP33076 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC16.98■□□□□ 0.31
CIITAP33076 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.98■□□□□ 0.31
CIITAP33076 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CIITAP33076 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CIITAP33076 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 AL136309.1-201ENST00000403917 691 ntBASIC16.98■□□□□ 0.31
CIITAP33076 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.98■□□□□ 0.31
CIITAP33076 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 AL033527.4-201ENST00000641026 673 ntBASIC16.98■□□□□ 0.31
CIITAP33076 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CIITAP33076 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CIITAP33076 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CIITAP33076 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.98■□□□□ 0.31
CIITAP33076 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CIITAP33076 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.98■□□□□ 0.31
CIITAP33076 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms