Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC14.2□□□□□ -0.14
COL5A1P20908 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.2□□□□□ -0.14
COL5A1P20908 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 AC006486.2-201ENST00000624246 2199 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.2□□□□□ -0.14
COL5A1P20908 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
COL5A1P20908 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC14.2□□□□□ -0.14
COL5A1P20908 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL5A1P20908 PIN4P1-201ENST00000451079 396 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 AC027237.1-201ENST00000560942 655 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 AC087392.5-201ENST00000612517 489 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 MIR6769A-201ENST00000617340 73 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL5A1P20908 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.19□□□□□ -0.14
COL5A1P20908 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
COL5A1P20908 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.19□□□□□ -0.14
COL5A1P20908 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC14.19□□□□□ -0.14
COL5A1P20908 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL5A1P20908 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC14.19□□□□□ -0.14
COL5A1P20908 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 BANF1P3-201ENST00000412556 261 ntBASIC14.19□□□□□ -0.14
COL5A1P20908 AL807761.2-201ENST00000422849 729 ntBASIC14.19□□□□□ -0.14
COL5A1P20908 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC14.19□□□□□ -0.14
COL5A1P20908 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.19□□□□□ -0.14
COL5A1P20908 AC093752.3-201ENST00000567343 901 ntBASIC14.19□□□□□ -0.14
COL5A1P20908 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC14.19□□□□□ -0.14
COL5A1P20908 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.19□□□□□ -0.14
COL5A1P20908 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.19□□□□□ -0.14
COL5A1P20908 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC14.19□□□□□ -0.14
COL5A1P20908 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC14.19□□□□□ -0.14
COL5A1P20908 MIR6858-201ENST00000620733 67 ntBASIC14.19□□□□□ -0.14
COL5A1P20908 AC073911.3-201ENST00000624401 631 ntBASIC14.19□□□□□ -0.14
COL5A1P20908 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL5A1P20908 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.19□□□□□ -0.14
COL5A1P20908 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
COL5A1P20908 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC14.19□□□□□ -0.14
COL5A1P20908 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL5A1P20908 AC090502.4-201ENST00000551714 1386 ntBASIC14.19□□□□□ -0.14
COL5A1P20908 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.19□□□□□ -0.14
COL5A1P20908 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL5A1P20908 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC14.19□□□□□ -0.14
COL5A1P20908 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL5A1P20908 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.19□□□□□ -0.14
COL5A1P20908 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
COL5A1P20908 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.18□□□□□ -0.14
COL5A1P20908 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.18□□□□□ -0.14
COL5A1P20908 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
COL5A1P20908 LINC01815-202ENST00000641468 1409 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL5A1P20908 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.18□□□□□ -0.14
COL5A1P20908 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
COL5A1P20908 AC005357.2-202ENST00000590507 1060 ntBASIC14.18□□□□□ -0.14
COL5A1P20908 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms