Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC15.24■□□□□ 0.03
COL6A3P12111 HNRNPA1P2-207ENST00000432375 960 ntBASIC15.24■□□□□ 0.03
COL6A3P12111 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 AL110503.1-201ENST00000457224 534 ntTSL 3 BASIC15.24■□□□□ 0.03
COL6A3P12111 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
COL6A3P12111 NAT9-204ENST00000578822 839 ntTSL 3 BASIC15.24■□□□□ 0.03
COL6A3P12111 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC15.24■□□□□ 0.03
COL6A3P12111 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
COL6A3P12111 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
COL6A3P12111 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 ASS1P2-201ENST00000439895 1223 ntBASIC15.24■□□□□ 0.03
COL6A3P12111 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A3P12111 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 MIR6819-201ENST00000622122 61 ntBASIC15.24■□□□□ 0.03
COL6A3P12111 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A3P12111 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 NR0B1-201ENST00000378963 475 ntTSL 2 BASIC15.23■□□□□ 0.03
COL6A3P12111 SNRPCP15-201ENST00000424055 192 ntBASIC15.23■□□□□ 0.03
COL6A3P12111 FAM86JP-202ENST00000484500 988 ntBASIC15.23■□□□□ 0.03
COL6A3P12111 RN7SL564P-201ENST00000496309 250 ntBASIC15.23■□□□□ 0.03
COL6A3P12111 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC15.23■□□□□ 0.03
COL6A3P12111 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC15.23■□□□□ 0.03
COL6A3P12111 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC15.23■□□□□ 0.03
COL6A3P12111 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.23■□□□□ 0.03
COL6A3P12111 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 MSANTD2P1-201ENST00000445341 1368 ntBASIC15.23■□□□□ 0.03
COL6A3P12111 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.23■□□□□ 0.03
COL6A3P12111 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.23■□□□□ 0.03
COL6A3P12111 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 AC112694.1-202ENST00000540985 943 ntBASIC15.23■□□□□ 0.03
COL6A3P12111 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC15.23■□□□□ 0.03
COL6A3P12111 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
COL6A3P12111 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC15.23■□□□□ 0.03
COL6A3P12111 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC15.23■□□□□ 0.03
COL6A3P12111 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A3P12111 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.23■□□□□ 0.03
COL6A3P12111 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 MIR181D-201ENST00000384853 137 ntBASIC15.22■□□□□ 0.03
COL6A3P12111 MIR645-201ENST00000385283 94 ntBASIC15.22■□□□□ 0.03
COL6A3P12111 SOD1-202ENST00000389995 865 ntTSL 3 BASIC15.22■□□□□ 0.03
COL6A3P12111 LINC01824-201ENST00000436082 528 ntTSL 4 BASIC15.22■□□□□ 0.03
COL6A3P12111 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 COQ4-204ENST00000608951 781 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 AC021072.1-201ENST00000635789 835 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
COL6A3P12111 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.22■□□□□ 0.03
COL6A3P12111 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A3P12111 AC004923.3-201ENST00000527532 355 ntBASIC15.22■□□□□ 0.03
COL6A3P12111 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC15.22■□□□□ 0.03
COL6A3P12111 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC15.22■□□□□ 0.03
COL6A3P12111 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC15.22■□□□□ 0.03
COL6A3P12111 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A3P12111 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms