Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 AP001582.1-201ENST00000525856 295 ntBASIC13.84□□□□□ -0.19
HOXD4P09016 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
HOXD4P09016 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HOXD4P09016 AC069224.1-201ENST00000566372 1715 ntBASIC13.84□□□□□ -0.19
HOXD4P09016 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.84□□□□□ -0.19
HOXD4P09016 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXD4P09016 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXD4P09016 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXD4P09016 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
HOXD4P09016 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXD4P09016 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXD4P09016 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HOXD4P09016 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.83□□□□□ -0.2
HOXD4P09016 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXD4P09016 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HOXD4P09016 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
HOXD4P09016 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.83□□□□□ -0.2
HOXD4P09016 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC13.83□□□□□ -0.2
HOXD4P09016 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 FTH1P14-201ENST00000482930 551 ntBASIC13.83□□□□□ -0.2
HOXD4P09016 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 AGER-214ENST00000538695 487 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 AC103810.3-201ENST00000583567 96 ntBASIC13.83□□□□□ -0.2
HOXD4P09016 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HOXD4P09016 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.83□□□□□ -0.2
HOXD4P09016 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
HOXD4P09016 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HOXD4P09016 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
HOXD4P09016 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.83□□□□□ -0.2
HOXD4P09016 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 AC018892.3-201ENST00000623986 2499 ntBASIC13.83□□□□□ -0.2
HOXD4P09016 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
HOXD4P09016 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HOXD4P09016 AC010491.1-201ENST00000563101 2797 ntBASIC13.83□□□□□ -0.2
HOXD4P09016 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
HOXD4P09016 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 AC006486.2-201ENST00000624246 2199 ntBASIC13.82□□□□□ -0.2
HOXD4P09016 AC005912.2-201ENST00000619492 2400 ntBASIC13.82□□□□□ -0.2
HOXD4P09016 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
HOXD4P09016 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.82□□□□□ -0.2
HOXD4P09016 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC13.82□□□□□ -0.2
HOXD4P09016 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.82□□□□□ -0.2
HOXD4P09016 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HOXD4P09016 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms