Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.19■□□□□ 0.02
SHOX2O60902 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.19■□□□□ 0.02
SHOX2O60902 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.19■□□□□ 0.02
SHOX2O60902 RNPS1P1-201ENST00000507437 918 ntBASIC15.19■□□□□ 0.02
SHOX2O60902 AC073648.2-201ENST00000510116 352 ntBASIC15.19■□□□□ 0.02
SHOX2O60902 AC012640.2-201ENST00000561606 901 ntBASIC15.19■□□□□ 0.02
SHOX2O60902 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.19■□□□□ 0.02
SHOX2O60902 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC15.19■□□□□ 0.02
SHOX2O60902 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC15.19■□□□□ 0.02
SHOX2O60902 POM121L14P-201ENST00000406100 1558 ntBASIC15.19■□□□□ 0.02
SHOX2O60902 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 AC135782.3-201ENST00000562782 2105 ntBASIC15.19■□□□□ 0.02
SHOX2O60902 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
SHOX2O60902 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
SHOX2O60902 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 CICP1-201ENST00000416803 2410 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 HNRNPDP1-201ENST00000439535 754 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.18■□□□□ 0.02
SHOX2O60902 FAM189A2-204ENST00000455972 2107 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.18■□□□□ 0.02
SHOX2O60902 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 UNC93B7-201ENST00000509439 705 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.18■□□□□ 0.02
SHOX2O60902 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.18■□□□□ 0.02
SHOX2O60902 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.18■□□□□ 0.02
SHOX2O60902 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.18■□□□□ 0.02
SHOX2O60902 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.18■□□□□ 0.02
SHOX2O60902 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 AL356488.2-201ENST00000602755 427 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 MIR1199-201ENST00000621445 119 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 AC004790.2-201ENST00000623588 572 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 TP73-AS1-207ENST00000624167 988 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 TUBGCP4-201ENST00000260383 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
SHOX2O60902 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 AL365209.1-201ENST00000624418 6473 ntBASIC15.18■□□□□ 0.02
SHOX2O60902 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC15.18■□□□□ 0.02
SHOX2O60902 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
SHOX2O60902 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC15.18■□□□□ 0.02
SHOX2O60902 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SHOX2O60902 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 AL365181.3-201ENST00000605886 3222 ntBASIC15.17■□□□□ 0.02
SHOX2O60902 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.17■□□□□ 0.02
SHOX2O60902 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.17■□□□□ 0.02
SHOX2O60902 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SHOX2O60902 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms