Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 AC003102.2-201ENST00000589195 1469 ntBASIC16.95■□□□□ 0.3
MSH4O15457 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 FAM21FP-201ENST00000426241 1131 ntBASIC16.95■□□□□ 0.3
MSH4O15457 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
MSH4O15457 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
MSH4O15457 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.95■□□□□ 0.3
MSH4O15457 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.95■□□□□ 0.3
MSH4O15457 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.95■□□□□ 0.3
MSH4O15457 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 AC009542.2-202ENST00000619004 1067 ntBASIC16.95■□□□□ 0.3
MSH4O15457 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
MSH4O15457 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
MSH4O15457 AP000593.2-201ENST00000542775 1433 ntBASIC16.95■□□□□ 0.3
MSH4O15457 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.95■□□□□ 0.3
MSH4O15457 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
MSH4O15457 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
MSH4O15457 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 AC009093.2-202ENST00000620513 2079 ntBASIC16.94■□□□□ 0.3
MSH4O15457 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSH4O15457 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH4O15457 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
MSH4O15457 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH4O15457 AP006547.1-201ENST00000563435 692 ntBASIC16.94■□□□□ 0.3
MSH4O15457 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.94■□□□□ 0.3
MSH4O15457 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
MSH4O15457 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH4O15457 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
MSH4O15457 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
MSH4O15457 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
MSH4O15457 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.94■□□□□ 0.3
MSH4O15457 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.94■□□□□ 0.3
MSH4O15457 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.94■□□□□ 0.3
MSH4O15457 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
MSH4O15457 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 CICP23-201ENST00000605013 2741 ntBASIC16.93■□□□□ 0.3
MSH4O15457 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
MSH4O15457 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
MSH4O15457 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.93■□□□□ 0.3
MSH4O15457 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH4O15457 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC16.93■□□□□ 0.3
MSH4O15457 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MSH4O15457 RN7SKP175-201ENST00000408472 289 ntBASIC16.93■□□□□ 0.3
MSH4O15457 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.93■□□□□ 0.3
MSH4O15457 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.93■□□□□ 0.3
MSH4O15457 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.93■□□□□ 0.3
MSH4O15457 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC16.93■□□□□ 0.3
MSH4O15457 AC010328.2-201ENST00000597698 1111 ntBASIC16.93■□□□□ 0.3
MSH4O15457 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms