Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AC211486.1-202ENST00000416371 468 ntBASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AC004066.1-201ENST00000502488 802 ntBASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AC211476.1-201ENST00000503899 468 ntBASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 C8orf49-201ENST00000525043 1968 ntBASIC14.38□□□□□ -0.11
VAPAQ9P0L0 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 AC023090.2-201ENST00000625182 2110 ntBASIC14.38□□□□□ -0.11
VAPAQ9P0L0 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VAPAQ9P0L0 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 AC018665.1-201ENST00000622927 1362 ntBASIC14.37□□□□□ -0.11
VAPAQ9P0L0 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 UPF3AP3-201ENST00000420996 769 ntBASIC14.37□□□□□ -0.11
VAPAQ9P0L0 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 AC044860.1-202ENST00000559481 777 ntBASIC14.37□□□□□ -0.11
VAPAQ9P0L0 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 AC027612.4-201ENST00000605371 583 ntBASIC14.37□□□□□ -0.11
VAPAQ9P0L0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 AC004461.2-201ENST00000629517 803 ntBASIC14.37□□□□□ -0.11
VAPAQ9P0L0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC14.37□□□□□ -0.11
VAPAQ9P0L0 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 AC254562.1-201ENST00000417586 456 ntBASIC14.36□□□□□ -0.11
VAPAQ9P0L0 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.36□□□□□ -0.11
VAPAQ9P0L0 AP000347.1-202ENST00000435868 847 ntBASIC14.36□□□□□ -0.11
VAPAQ9P0L0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms