Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 AL008718.2-201ENST00000609206 1313 ntBASIC16.82■□□□□ 0.28
VTA1Q9NP79 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 RN7SKP214-201ENST00000364208 315 ntBASIC16.82■□□□□ 0.28
VTA1Q9NP79 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 HINT2P1-201ENST00000419438 481 ntBASIC16.82■□□□□ 0.28
VTA1Q9NP79 AC007274.2-201ENST00000421675 662 ntBASIC16.82■□□□□ 0.28
VTA1Q9NP79 VDAC1P1-201ENST00000439229 848 ntBASIC16.82■□□□□ 0.28
VTA1Q9NP79 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.82■□□□□ 0.28
VTA1Q9NP79 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.82■□□□□ 0.28
VTA1Q9NP79 MIR3907-201ENST00000579424 151 ntBASIC16.82■□□□□ 0.28
VTA1Q9NP79 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.82■□□□□ 0.28
VTA1Q9NP79 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.82■□□□□ 0.28
VTA1Q9NP79 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.82■□□□□ 0.28
VTA1Q9NP79 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.82■□□□□ 0.28
VTA1Q9NP79 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
VTA1Q9NP79 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VTA1Q9NP79 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.81■□□□□ 0.28
VTA1Q9NP79 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 GGCT-203ENST00000409144 836 ntTSL 2 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 KLF2P1-201ENST00000447438 1042 ntBASIC16.81■□□□□ 0.28
VTA1Q9NP79 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 AC009779.1-201ENST00000551138 283 ntBASIC16.81■□□□□ 0.28
VTA1Q9NP79 AC008805.1-201ENST00000590892 364 ntBASIC16.81■□□□□ 0.28
VTA1Q9NP79 AC079336.7-201ENST00000623428 1078 ntBASIC16.81■□□□□ 0.28
VTA1Q9NP79 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.81■□□□□ 0.28
VTA1Q9NP79 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VTA1Q9NP79 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 CMC1-204ENST00000423894 549 ntTSL 2 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 AL596276.2-201ENST00000447525 331 ntBASIC16.8■□□□□ 0.28
VTA1Q9NP79 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VTA1Q9NP79 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 TMEM198B-204ENST00000484016 896 ntBASIC16.8■□□□□ 0.28
VTA1Q9NP79 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.8■□□□□ 0.28
VTA1Q9NP79 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms