Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 Z93015.1-201ENST00000451718 390 ntBASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 PFN1P12-201ENST00000455938 534 ntBASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 ALG3P1-201ENST00000508806 1114 ntBASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 OR10B1P-201ENST00000601666 907 ntBASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 AC138696.2-201ENST00000607376 223 ntBASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 DIO1-215ENST00000610607 796 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 PCDHA3-202ENST00000532566 4594 ntBASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AL033527.4-201ENST00000641026 673 ntBASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AC015818.8-201ENST00000587907 1519 ntBASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AC138035.3-201ENST00000622706 2791 ntBASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 PPT1-215ENST00000641471 2368 ntBASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC19.28■□□□□ 0.68
CHMP4AQ9BY43 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 AL138725.1-201ENST00000407347 1314 ntBASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 PAUPAR-201ENST00000630360 2965 ntBASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 RGS5-214ENST00000429865 754 ntTSL 3 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP4AQ9BY43 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4AQ9BY43 PARN-202ENST00000420015 2360 ntTSL 2 BASIC19.27■□□□□ 0.67
CHMP4AQ9BY43 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4AQ9BY43 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP4AQ9BY43 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP4AQ9BY43 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms