Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
USP47Q96K76 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC21.07■□□□□ 0.96
USP47Q96K76 SALL4P5-201ENST00000419001 1760 ntBASIC21.07■□□□□ 0.96
USP47Q96K76 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
USP47Q96K76 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
USP47Q96K76 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC21.07■□□□□ 0.96
USP47Q96K76 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC21.07■□□□□ 0.96
USP47Q96K76 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC21.07■□□□□ 0.96
USP47Q96K76 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC21.07■□□□□ 0.96
USP47Q96K76 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC21.07■□□□□ 0.96
USP47Q96K76 YBX1P6-201ENST00000442962 1002 ntBASIC21.07■□□□□ 0.96
USP47Q96K76 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC21.07■□□□□ 0.96
USP47Q96K76 GCOM2-201ENST00000509133 1104 ntBASIC21.07■□□□□ 0.96
USP47Q96K76 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
USP47Q96K76 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC21.07■□□□□ 0.96
USP47Q96K76 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC21.07■□□□□ 0.96
USP47Q96K76 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC21.07■□□□□ 0.96
USP47Q96K76 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC21.07■□□□□ 0.96
USP47Q96K76 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC21.07■□□□□ 0.96
USP47Q96K76 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC21.07■□□□□ 0.96
USP47Q96K76 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC21.07■□□□□ 0.96
USP47Q96K76 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
USP47Q96K76 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
USP47Q96K76 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC21.06■□□□□ 0.96
USP47Q96K76 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC21.06■□□□□ 0.96
USP47Q96K76 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
USP47Q96K76 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
USP47Q96K76 AL136309.1-201ENST00000403917 691 ntBASIC21.06■□□□□ 0.96
USP47Q96K76 HIST2H2BB-201ENST00000449108 381 ntBASIC21.06■□□□□ 0.96
USP47Q96K76 RNA5SP412-201ENST00000516234 123 ntBASIC21.06■□□□□ 0.96
USP47Q96K76 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC21.06■□□□□ 0.96
USP47Q96K76 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC21.06■□□□□ 0.96
USP47Q96K76 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC21.06■□□□□ 0.96
USP47Q96K76 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 TECR-220ENST00000600083 1204 ntTSL 2 BASIC21.06■□□□□ 0.96
USP47Q96K76 AC084346.2-201ENST00000607097 949 ntBASIC21.06■□□□□ 0.96
USP47Q96K76 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC21.06■□□□□ 0.96
USP47Q96K76 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC21.06■□□□□ 0.96
USP47Q96K76 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
USP47Q96K76 USP35-204ENST00000530267 2419 ntTSL 2 BASIC21.06■□□□□ 0.96
USP47Q96K76 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
USP47Q96K76 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC21.06■□□□□ 0.96
USP47Q96K76 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC21.05■□□□□ 0.96
USP47Q96K76 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC21.05■□□□□ 0.96
USP47Q96K76 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC21.05■□□□□ 0.96
USP47Q96K76 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC21.05■□□□□ 0.96
USP47Q96K76 AC023310.1-201ENST00000554836 735 ntBASIC21.05■□□□□ 0.96
USP47Q96K76 ZACNP1-201ENST00000612259 710 ntBASIC21.05■□□□□ 0.96
USP47Q96K76 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC21.05■□□□□ 0.96
USP47Q96K76 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
USP47Q96K76 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC21.05■□□□□ 0.96
USP47Q96K76 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC21.05■□□□□ 0.96
USP47Q96K76 AL023775.1-201ENST00000454907 1746 ntBASIC21.05■□□□□ 0.96
USP47Q96K76 AC007292.2-201ENST00000593524 1812 ntBASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms