Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.39■□□□□ 0.21
KRT39Q6A163 AC023090.2-201ENST00000625182 2110 ntBASIC16.39■□□□□ 0.21
KRT39Q6A163 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
KRT39Q6A163 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.39■□□□□ 0.21
KRT39Q6A163 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.39■□□□□ 0.21
KRT39Q6A163 RN7SL752P-201ENST00000463779 287 ntBASIC16.39■□□□□ 0.21
KRT39Q6A163 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 RPS15-202ENST00000585665 467 ntTSL 3 BASIC16.39■□□□□ 0.21
KRT39Q6A163 AC010319.3-201ENST00000597028 470 ntBASIC16.39■□□□□ 0.21
KRT39Q6A163 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
KRT39Q6A163 RPSAP52-203ENST00000622976 1023 ntBASIC16.39■□□□□ 0.21
KRT39Q6A163 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
KRT39Q6A163 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.39■□□□□ 0.21
KRT39Q6A163 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.39■□□□□ 0.21
KRT39Q6A163 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.39■□□□□ 0.21
KRT39Q6A163 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.39■□□□□ 0.21
KRT39Q6A163 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.39■□□□□ 0.21
KRT39Q6A163 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.39■□□□□ 0.21
KRT39Q6A163 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
KRT39Q6A163 AC106881.1-201ENST00000605849 3329 ntBASIC16.39■□□□□ 0.21
KRT39Q6A163 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.38■□□□□ 0.21
KRT39Q6A163 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
KRT39Q6A163 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
KRT39Q6A163 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.38■□□□□ 0.21
KRT39Q6A163 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.38■□□□□ 0.21
KRT39Q6A163 EIF3FP3-201ENST00000434851 1086 ntBASIC16.38■□□□□ 0.21
KRT39Q6A163 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 RN7SL692P-201ENST00000464677 288 ntBASIC16.38■□□□□ 0.21
KRT39Q6A163 AC011495.1-201ENST00000498085 584 ntBASIC16.38■□□□□ 0.21
KRT39Q6A163 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.38■□□□□ 0.21
KRT39Q6A163 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.38■□□□□ 0.21
KRT39Q6A163 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.38■□□□□ 0.21
KRT39Q6A163 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.38■□□□□ 0.21
KRT39Q6A163 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.38■□□□□ 0.21
KRT39Q6A163 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.38■□□□□ 0.21
KRT39Q6A163 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.38■□□□□ 0.21
KRT39Q6A163 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 AC055811.4-201ENST00000624039 1754 ntBASIC16.38■□□□□ 0.21
KRT39Q6A163 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.38■□□□□ 0.21
KRT39Q6A163 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC16.38■□□□□ 0.21
KRT39Q6A163 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.38■□□□□ 0.21
KRT39Q6A163 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
KRT39Q6A163 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
KRT39Q6A163 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.38■□□□□ 0.21
KRT39Q6A163 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
KRT39Q6A163 AC018442.1-201ENST00000421439 2061 ntBASIC16.38■□□□□ 0.21
KRT39Q6A163 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
KRT39Q6A163 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.37■□□□□ 0.21
KRT39Q6A163 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
KRT39Q6A163 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.37■□□□□ 0.21
KRT39Q6A163 MSTO2P-201ENST00000314835 1709 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms