Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 MIR557-201ENST00000385239 98 ntBASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 NEU3-207ENST00000534628 746 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 SSR4P1-203ENST00000599569 2260 ntBASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC88AQ3V6T2 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 MIR3188-201ENST00000583494 85 ntBASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 AC103810.10-201ENST00000606504 343 ntBASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 AC087392.5-201ENST00000612517 489 ntBASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC88AQ3V6T2 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC88AQ3V6T2 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CCDC88AQ3V6T2 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 STK26-204ENST00000481105 1835 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 AC239868.1-201ENST00000369385 493 ntBASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 FAU-202ENST00000434372 533 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 AC138466.5-201ENST00000624002 808 ntBASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 AC092299.1-201ENST00000632679 757 ntBASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 SCARNA21-201ENST00000517026 139 ntBASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CCDC88AQ3V6T2 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.13■□□□□ 0.49
CCDC88AQ3V6T2 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms