Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 AC004987.2-201ENST00000395959 1148 ntBASIC14.66□□□□□ -0.06
COL28A1Q2UY09 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 CASP16P-204ENST00000635032 809 ntBASIC14.66□□□□□ -0.06
COL28A1Q2UY09 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 AC112504.1-201ENST00000623415 1841 ntBASIC14.66□□□□□ -0.06
COL28A1Q2UY09 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL28A1Q2UY09 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 BNIP3P1-202ENST00000550043 1585 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 AC067930.6-201ENST00000623257 4947 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 NKAIN1P1-201ENST00000435754 582 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 PTK2-225ENST00000520892 571 ntTSL 4 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 AC091544.8-201ENST00000619490 361 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 AL009178.2-201ENST00000597278 2719 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 AC007326.2-201ENST00000624224 7579 ntBASIC14.65□□□□□ -0.06
COL28A1Q2UY09 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.65□□□□□ -0.06
COL28A1Q2UY09 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
COL28A1Q2UY09 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ACKR1-201ENST00000368121 1240 ntBASIC14.64□□□□□ -0.07
COL28A1Q2UY09 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 AC044849.1-201ENST00000519737 1188 ntBASIC14.64□□□□□ -0.07
COL28A1Q2UY09 LY6E-208ENST00000520531 490 ntTSL 2 BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL28A1Q2UY09 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms