Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.71■□□□□ 0.43
RHBDL3P58872 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC17.71■□□□□ 0.43
RHBDL3P58872 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC17.71■□□□□ 0.43
RHBDL3P58872 SCARNA21-201ENST00000517026 139 ntBASIC17.71■□□□□ 0.43
RHBDL3P58872 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
RHBDL3P58872 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC17.71■□□□□ 0.43
RHBDL3P58872 AC009779.1-201ENST00000551138 283 ntBASIC17.71■□□□□ 0.43
RHBDL3P58872 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC17.71■□□□□ 0.43
RHBDL3P58872 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC17.71■□□□□ 0.43
RHBDL3P58872 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC17.71■□□□□ 0.43
RHBDL3P58872 MIR6720-201ENST00000611664 98 ntBASIC17.71■□□□□ 0.43
RHBDL3P58872 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.71■□□□□ 0.43
RHBDL3P58872 AC091544.8-201ENST00000619490 361 ntBASIC17.71■□□□□ 0.43
RHBDL3P58872 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RHBDL3P58872 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
RHBDL3P58872 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC17.71■□□□□ 0.43
RHBDL3P58872 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RHBDL3P58872 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
RHBDL3P58872 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
RHBDL3P58872 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
RHBDL3P58872 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
RHBDL3P58872 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
RHBDL3P58872 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
RHBDL3P58872 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RHBDL3P58872 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
RHBDL3P58872 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
RHBDL3P58872 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.71■□□□□ 0.42
RHBDL3P58872 CICP6-201ENST00000457191 2729 ntBASIC17.71■□□□□ 0.42
RHBDL3P58872 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
RHBDL3P58872 AC105917.1-201ENST00000506637 2539 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
RHBDL3P58872 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 AL157407.1-201ENST00000435784 904 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC17.7■□□□□ 0.42
RHBDL3P58872 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.7■□□□□ 0.42
RHBDL3P58872 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.7■□□□□ 0.42
RHBDL3P58872 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC17.7■□□□□ 0.42
RHBDL3P58872 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.7■□□□□ 0.42
RHBDL3P58872 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
RHBDL3P58872 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC17.7■□□□□ 0.42
RHBDL3P58872 AC079328.1-201ENST00000560358 952 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 AC005962.1-201ENST00000584100 773 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 AC016629.1-201ENST00000596579 586 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.7■□□□□ 0.42
RHBDL3P58872 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.7■□□□□ 0.42
RHBDL3P58872 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.7■□□□□ 0.42
RHBDL3P58872 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.7■□□□□ 0.42
RHBDL3P58872 AC027601.3-201ENST00000622907 509 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 CU633904.3-201ENST00000624042 1029 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 AC015967.2-201ENST00000624092 234 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 AC006435.4-201ENST00000625037 234 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.7■□□□□ 0.42
RHBDL3P58872 AL356737.1-201ENST00000634391 234 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
RHBDL3P58872 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 ZBED1P1-201ENST00000502364 1930 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.7■□□□□ 0.42
RHBDL3P58872 AC136759.1-202ENST00000530858 2194 ntBASIC17.7■□□□□ 0.42
RHBDL3P58872 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
RHBDL3P58872 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
RHBDL3P58872 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
RHBDL3P58872 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
RHBDL3P58872 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.69■□□□□ 0.42
RHBDL3P58872 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.69■□□□□ 0.42
RHBDL3P58872 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC17.69■□□□□ 0.42
RHBDL3P58872 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RHBDL3P58872 SKA2-202ENST00000437036 625 ntTSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 AL645933.1-201ENST00000440087 609 ntBASIC17.69■□□□□ 0.42
RHBDL3P58872 MSRA-203ENST00000441698 788 ntTSL 2 BASIC17.69■□□□□ 0.42
RHBDL3P58872 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms