Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.83■□□□□ 0.12
COL4A4P53420 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL4A4P53420 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL4A4P53420 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
COL4A4P53420 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL4A4P53420 MIR557-201ENST00000385239 98 ntBASIC15.83■□□□□ 0.12
COL4A4P53420 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC15.83■□□□□ 0.12
COL4A4P53420 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.83■□□□□ 0.12
COL4A4P53420 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.83■□□□□ 0.12
COL4A4P53420 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC15.83■□□□□ 0.12
COL4A4P53420 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC15.83■□□□□ 0.12
COL4A4P53420 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.83■□□□□ 0.12
COL4A4P53420 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL4A4P53420 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC15.83■□□□□ 0.12
COL4A4P53420 ALG1L13P-202ENST00000519320 584 ntBASIC15.83■□□□□ 0.12
COL4A4P53420 POU5F1P2-201ENST00000521750 823 ntBASIC15.83■□□□□ 0.12
COL4A4P53420 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC15.83■□□□□ 0.12
COL4A4P53420 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC15.83■□□□□ 0.12
COL4A4P53420 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
COL4A4P53420 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL4A4P53420 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL4A4P53420 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 CYP4F23P-201ENST00000593402 1579 ntBASIC15.82■□□□□ 0.12
COL4A4P53420 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.82■□□□□ 0.12
COL4A4P53420 AC020910.5-201ENST00000623668 1865 ntBASIC15.82■□□□□ 0.12
COL4A4P53420 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC15.82■□□□□ 0.12
COL4A4P53420 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.82■□□□□ 0.12
COL4A4P53420 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL4A4P53420 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL4A4P53420 AL645933.1-201ENST00000440087 609 ntBASIC15.82■□□□□ 0.12
COL4A4P53420 FTH1P22-201ENST00000456305 520 ntBASIC15.82■□□□□ 0.12
COL4A4P53420 SCARNA21-201ENST00000517026 139 ntBASIC15.82■□□□□ 0.12
COL4A4P53420 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.82■□□□□ 0.12
COL4A4P53420 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
COL4A4P53420 HPN-206ENST00000597419 1212 ntTSL 5 BASIC15.82■□□□□ 0.12
COL4A4P53420 AC138466.4-201ENST00000623965 852 ntBASIC15.82■□□□□ 0.12
COL4A4P53420 AC023090.2-201ENST00000625182 2110 ntBASIC15.82■□□□□ 0.12
COL4A4P53420 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL4A4P53420 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC15.81■□□□□ 0.12
COL4A4P53420 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL4A4P53420 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
COL4A4P53420 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.81■□□□□ 0.12
COL4A4P53420 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.81■□□□□ 0.12
COL4A4P53420 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL4A4P53420 PSMD4P1-201ENST00000433951 1109 ntBASIC15.81■□□□□ 0.12
COL4A4P53420 DUTP3-201ENST00000450025 415 ntBASIC15.81■□□□□ 0.12
COL4A4P53420 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC15.81■□□□□ 0.12
COL4A4P53420 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC15.81■□□□□ 0.12
COL4A4P53420 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC15.81■□□□□ 0.12
COL4A4P53420 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 AC136759.1-202ENST00000530858 2194 ntBASIC15.81■□□□□ 0.12
COL4A4P53420 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 KRT18P9-201ENST00000604826 1300 ntBASIC15.81■□□□□ 0.12
COL4A4P53420 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 IL9RP3-201ENST00000442856 1674 ntBASIC15.81■□□□□ 0.12
COL4A4P53420 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.81■□□□□ 0.12
COL4A4P53420 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.81■□□□□ 0.12
COL4A4P53420 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL4A4P53420 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC15.81■□□□□ 0.12
COL4A4P53420 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
COL4A4P53420 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL4A4P53420 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms