Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
BRCC3P46736 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 RN7SKP175-201ENST00000408472 289 ntBASIC16.07■□□□□ 0.16
BRCC3P46736 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 POM121L10P-201ENST00000436994 1285 ntBASIC16.07■□□□□ 0.16
BRCC3P46736 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 APOA2-204ENST00000464492 530 ntTSL 3 BASIC16.07■□□□□ 0.16
BRCC3P46736 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.07■□□□□ 0.16
BRCC3P46736 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.07■□□□□ 0.16
BRCC3P46736 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 MROH4P-201ENST00000431302 1578 ntBASIC16.07■□□□□ 0.16
BRCC3P46736 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.07■□□□□ 0.16
BRCC3P46736 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
BRCC3P46736 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
BRCC3P46736 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
BRCC3P46736 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
BRCC3P46736 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.07■□□□□ 0.16
BRCC3P46736 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.06■□□□□ 0.16
BRCC3P46736 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC16.06■□□□□ 0.16
BRCC3P46736 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
BRCC3P46736 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.06■□□□□ 0.16
BRCC3P46736 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
BRCC3P46736 RN7SKP230-201ENST00000365642 335 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
BRCC3P46736 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.06■□□□□ 0.16
BRCC3P46736 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.06■□□□□ 0.16
BRCC3P46736 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.06■□□□□ 0.16
BRCC3P46736 AC004898.1-201ENST00000451057 766 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.06■□□□□ 0.16
BRCC3P46736 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.06■□□□□ 0.16
BRCC3P46736 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.06■□□□□ 0.16
BRCC3P46736 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.06■□□□□ 0.16
BRCC3P46736 AL451050.2-201ENST00000606967 682 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 AC138696.2-201ENST00000607376 223 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 AL358472.3-201ENST00000608147 415 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 AL139099.5-201ENST00000635274 300 ntBASIC16.06■□□□□ 0.16
BRCC3P46736 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.06■□□□□ 0.16
BRCC3P46736 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
BRCC3P46736 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
BRCC3P46736 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.05■□□□□ 0.16
BRCC3P46736 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
BRCC3P46736 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.05■□□□□ 0.16
BRCC3P46736 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
BRCC3P46736 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.05■□□□□ 0.16
BRCC3P46736 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
BRCC3P46736 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
BRCC3P46736 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.05■□□□□ 0.16
BRCC3P46736 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms