Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC12.94□□□□□ -0.34
USF1P22415 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 EMC4-209ENST00000559421 497 ntTSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 GNRHR2-203ENST00000581100 1187 ntBASIC12.94□□□□□ -0.34
USF1P22415 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC12.94□□□□□ -0.34
USF1P22415 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC12.94□□□□□ -0.34
USF1P22415 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.94□□□□□ -0.34
USF1P22415 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.94□□□□□ -0.34
USF1P22415 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
USF1P22415 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
USF1P22415 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 GUK1-206ENST00000366723 845 ntTSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC12.93□□□□□ -0.34
USF1P22415 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 MDH2-205ENST00000461263 648 ntTSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC12.93□□□□□ -0.34
USF1P22415 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC12.93□□□□□ -0.34
USF1P22415 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC12.93□□□□□ -0.34
USF1P22415 AC138951.2-201ENST00000623455 1161 ntBASIC12.93□□□□□ -0.34
USF1P22415 AC068587.10-201ENST00000641210 219 ntBASIC12.93□□□□□ -0.34
USF1P22415 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
USF1P22415 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 DKFZP434A062-201ENST00000573103 5021 ntBASIC12.93□□□□□ -0.34
USF1P22415 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
USF1P22415 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC12.93□□□□□ -0.34
USF1P22415 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
USF1P22415 AC018892.3-201ENST00000623986 2499 ntBASIC12.93□□□□□ -0.34
USF1P22415 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
USF1P22415 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.92□□□□□ -0.34
USF1P22415 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC12.92□□□□□ -0.34
USF1P22415 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
USF1P22415 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USF1P22415 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms