Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
APOEP02649 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
APOEP02649 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.96■□□□□ 0.15
APOEP02649 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
APOEP02649 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC15.96■□□□□ 0.15
APOEP02649 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
APOEP02649 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
APOEP02649 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
APOEP02649 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
APOEP02649 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.96■□□□□ 0.15
APOEP02649 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
APOEP02649 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
APOEP02649 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
APOEP02649 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
APOEP02649 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 CICP11-201ENST00000434745 2827 ntBASIC15.95■□□□□ 0.14
APOEP02649 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 LINC01101-201ENST00000622953 1884 ntBASIC15.95■□□□□ 0.14
APOEP02649 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
APOEP02649 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.95■□□□□ 0.14
APOEP02649 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 GHSR-202ENST00000427970 912 ntBASIC15.95■□□□□ 0.14
APOEP02649 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 KRT18P25-201ENST00000508931 1278 ntBASIC15.95■□□□□ 0.14
APOEP02649 AC068587.3-201ENST00000526613 355 ntBASIC15.95■□□□□ 0.14
APOEP02649 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.95■□□□□ 0.14
APOEP02649 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.95■□□□□ 0.14
APOEP02649 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 AC148477.4-201ENST00000613430 1793 ntBASIC15.95■□□□□ 0.14
APOEP02649 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
APOEP02649 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC15.95■□□□□ 0.14
APOEP02649 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
APOEP02649 AC093525.8-201ENST00000624099 1342 ntBASIC15.94■□□□□ 0.14
APOEP02649 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.94■□□□□ 0.14
APOEP02649 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
APOEP02649 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.94■□□□□ 0.14
APOEP02649 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.94■□□□□ 0.14
APOEP02649 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.94■□□□□ 0.14
APOEP02649 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
APOEP02649 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.94■□□□□ 0.14
APOEP02649 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
APOEP02649 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms