Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC18.72■□□□□ 0.59
CACNA1FO60840 NAT9-222ENST00000583476 583 ntTSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 AL022328.3-201ENST00000607943 679 ntBASIC18.72■□□□□ 0.59
CACNA1FO60840 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CACNA1FO60840 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC18.72■□□□□ 0.59
CACNA1FO60840 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 F10-203ENST00000409306 1450 ntTSL 3 BASIC18.71■□□□□ 0.59
CACNA1FO60840 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.71■□□□□ 0.59
CACNA1FO60840 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
CACNA1FO60840 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC18.71■□□□□ 0.59
CACNA1FO60840 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC18.71■□□□□ 0.59
CACNA1FO60840 ATP6V0CP2-201ENST00000469409 207 ntBASIC18.71■□□□□ 0.59
CACNA1FO60840 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.71■□□□□ 0.59
CACNA1FO60840 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.71■□□□□ 0.59
CACNA1FO60840 AC133540.1-201ENST00000620845 1019 ntBASIC18.71■□□□□ 0.59
CACNA1FO60840 AL162426.1-201ENST00000624141 743 ntBASIC18.71■□□□□ 0.59
CACNA1FO60840 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 MTHFR-210ENST00000641407 2387 ntBASIC18.71■□□□□ 0.59
CACNA1FO60840 FAM90A7P-201ENST00000382628 1395 ntBASIC18.71■□□□□ 0.59
CACNA1FO60840 FAM90A23P-201ENST00000400136 1395 ntBASIC18.71■□□□□ 0.59
CACNA1FO60840 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC18.71■□□□□ 0.59
CACNA1FO60840 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
CACNA1FO60840 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CACNA1FO60840 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.58
CACNA1FO60840 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CACNA1FO60840 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 KRT8P13-201ENST00000463294 1010 ntBASIC18.7■□□□□ 0.58
CACNA1FO60840 OARD1-212ENST00000482515 832 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 SORD2P-201ENST00000558556 1069 ntBASIC18.7■□□□□ 0.58
CACNA1FO60840 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.7■□□□□ 0.58
CACNA1FO60840 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 AC138028.6-201ENST00000616106 1482 ntBASIC18.7■□□□□ 0.58
CACNA1FO60840 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 GRN-222ENST00000639447 1314 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
CACNA1FO60840 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 BCYRN1-201ENST00000418539 200 ntBASIC18.7■□□□□ 0.58
CACNA1FO60840 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC18.7■□□□□ 0.58
CACNA1FO60840 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.7■□□□□ 0.58
CACNA1FO60840 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC18.7■□□□□ 0.58
CACNA1FO60840 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC18.7■□□□□ 0.58
CACNA1FO60840 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CACNA1FO60840 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC18.7■□□□□ 0.58
CACNA1FO60840 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
CACNA1FO60840 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.69■□□□□ 0.58
CACNA1FO60840 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CACNA1FO60840 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CACNA1FO60840 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC18.69■□□□□ 0.58
CACNA1FO60840 AL035414.1-201ENST00000451327 857 ntBASIC18.69■□□□□ 0.58
CACNA1FO60840 REEP1-202ENST00000453231 940 ntTSL 2 BASIC18.69■□□□□ 0.58
CACNA1FO60840 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC18.69■□□□□ 0.58
CACNA1FO60840 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC18.69■□□□□ 0.58
CACNA1FO60840 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 MIR6787-201ENST00000616675 61 ntBASIC18.69■□□□□ 0.58
CACNA1FO60840 AL139099.5-201ENST00000635274 300 ntBASIC18.69■□□□□ 0.58
CACNA1FO60840 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CACNA1FO60840 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms