Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AC120045.2-201ENST00000567334 178 ntBASIC15.36■□□□□ 0.05
TRIM38O00635 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.36■□□□□ 0.05
TRIM38O00635 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.36■□□□□ 0.05
TRIM38O00635 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.36■□□□□ 0.05
TRIM38O00635 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM38O00635 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
TRIM38O00635 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM38O00635 REXO1L1P-202ENST00000608646 1974 ntBASIC15.36■□□□□ 0.05
TRIM38O00635 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.36■□□□□ 0.05
TRIM38O00635 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TRIM38O00635 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM38O00635 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.36■□□□□ 0.05
TRIM38O00635 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.36■□□□□ 0.05
TRIM38O00635 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRIM38O00635 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.36■□□□□ 0.05
TRIM38O00635 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.36■□□□□ 0.05
TRIM38O00635 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM38O00635 LINC00552-201ENST00000625151 2579 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
TRIM38O00635 AP001282.1-201ENST00000531301 1499 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 AC092933.1-201ENST00000393644 945 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.35■□□□□ 0.05
TRIM38O00635 AC136604.1-201ENST00000418535 575 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.35■□□□□ 0.05
TRIM38O00635 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 RPL7P3-201ENST00000441388 714 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM38O00635 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.35■□□□□ 0.05
TRIM38O00635 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM38O00635 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM38O00635 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 HNRNPUP1-201ENST00000554987 333 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM38O00635 CLUHP6-201ENST00000580789 941 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.35■□□□□ 0.05
TRIM38O00635 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 GPR182-203ENST00000622922 591 ntBASIC15.35■□□□□ 0.05
TRIM38O00635 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.35■□□□□ 0.05
TRIM38O00635 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.35■□□□□ 0.05
TRIM38O00635 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.35■□□□□ 0.05
TRIM38O00635 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRIM38O00635 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
TRIM38O00635 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM38O00635 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
TRIM38O00635 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.34■□□□□ 0.05
TRIM38O00635 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.34■□□□□ 0.05
TRIM38O00635 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.34■□□□□ 0.05
TRIM38O00635 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
TRIM38O00635 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
TRIM38O00635 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRIM38O00635 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms