Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 CICP14-201ENST00000629111 2732 ntBASIC14.82□□□□□ -0.04
VPS4AQ9UN37 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 FAM86MP-201ENST00000340703 885 ntBASIC14.82□□□□□ -0.04
VPS4AQ9UN37 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 FO393414.2-201ENST00000405153 598 ntBASIC14.82□□□□□ -0.04
VPS4AQ9UN37 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 MYCLP2-201ENST00000449268 967 ntBASIC14.82□□□□□ -0.04
VPS4AQ9UN37 SERBP1P3-201ENST00000459980 809 ntBASIC14.82□□□□□ -0.04
VPS4AQ9UN37 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS4AQ9UN37 REXO1L6P-201ENST00000603433 1515 ntBASIC14.82□□□□□ -0.04
VPS4AQ9UN37 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.81□□□□□ -0.04
VPS4AQ9UN37 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 PARP8-218ENST00000513738 596 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS4AQ9UN37 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS4AQ9UN37 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms