Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.7■□□□□ 0.42
CCDC39Q9UFE4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 Z97205.2-201ENST00000564697 1639 ntBASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 RN7SL618P-201ENST00000477850 296 ntBASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AC027369.6-201ENST00000525520 931 ntBASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AC025048.3-201ENST00000590609 569 ntBASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AC005702.4-201ENST00000618393 416 ntBASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AC093028.1-201ENST00000622998 982 ntBASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CCDC39Q9UFE4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 AC092135.3-201ENST00000624151 1846 ntBASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 KRT18P28-201ENST00000453838 1332 ntBASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC39Q9UFE4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms