Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.27■□□□□ 0.2
CNTN3Q9P232 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 MIR4538-201ENST00000581377 78 ntBASIC16.27■□□□□ 0.2
CNTN3Q9P232 PPY2P-201ENST00000582808 702 ntBASIC16.27■□□□□ 0.2
CNTN3Q9P232 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CNTN3Q9P232 AC138696.2-201ENST00000607376 223 ntBASIC16.27■□□□□ 0.2
CNTN3Q9P232 MIR6869-201ENST00000619434 62 ntBASIC16.27■□□□□ 0.2
CNTN3Q9P232 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.2
CNTN3Q9P232 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.27■□□□□ 0.19
CNTN3Q9P232 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.27■□□□□ 0.19
CNTN3Q9P232 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CNTN3Q9P232 AL023775.1-201ENST00000454907 1746 ntBASIC16.27■□□□□ 0.19
CNTN3Q9P232 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.27■□□□□ 0.19
CNTN3Q9P232 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.19
CNTN3Q9P232 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CNTN3Q9P232 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CNTN3Q9P232 AL136379.1-201ENST00000623471 2642 ntBASIC16.27■□□□□ 0.19
CNTN3Q9P232 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNTN3Q9P232 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.27■□□□□ 0.19
CNTN3Q9P232 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.27■□□□□ 0.19
CNTN3Q9P232 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CNTN3Q9P232 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CNTN3Q9P232 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 FKBP4P6-201ENST00000457486 1332 ntBASIC16.26■□□□□ 0.19
CNTN3Q9P232 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 AC015818.8-201ENST00000587907 1519 ntBASIC16.26■□□□□ 0.19
CNTN3Q9P232 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 MIR326-201ENST00000362220 95 ntBASIC16.26■□□□□ 0.19
CNTN3Q9P232 AL136309.1-201ENST00000403917 691 ntBASIC16.26■□□□□ 0.19
CNTN3Q9P232 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 AC108725.1-201ENST00000495472 409 ntBASIC16.26■□□□□ 0.19
CNTN3Q9P232 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 RN7SL219P-201ENST00000582872 296 ntBASIC16.26■□□□□ 0.19
CNTN3Q9P232 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
CNTN3Q9P232 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CNTN3Q9P232 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CNTN3Q9P232 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CNTN3Q9P232 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 660 ms