Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 AC134684.3-201ENST00000641758 218 ntBASIC17.32■□□□□ 0.36
ERCC4Q92889 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
ERCC4Q92889 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
ERCC4Q92889 SPDYE7P-202ENST00000420373 878 ntBASIC17.31■□□□□ 0.36
ERCC4Q92889 AC015922.1-201ENST00000421102 1152 ntBASIC17.31■□□□□ 0.36
ERCC4Q92889 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.31■□□□□ 0.36
ERCC4Q92889 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.31■□□□□ 0.36
ERCC4Q92889 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.31■□□□□ 0.36
ERCC4Q92889 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
ERCC4Q92889 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 TBCB-211ENST00000589996 724 ntTSL 3 BASIC17.31■□□□□ 0.36
ERCC4Q92889 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC17.31■□□□□ 0.36
ERCC4Q92889 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 AL157414.3-201ENST00000624276 1954 ntBASIC17.31■□□□□ 0.36
ERCC4Q92889 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC17.31■□□□□ 0.36
ERCC4Q92889 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.31■□□□□ 0.36
ERCC4Q92889 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC4Q92889 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.3■□□□□ 0.36
ERCC4Q92889 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
ERCC4Q92889 AC051619.7-201ENST00000568314 623 ntBASIC17.3■□□□□ 0.36
ERCC4Q92889 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 AC011467.4-201ENST00000594891 528 ntBASIC17.3■□□□□ 0.36
ERCC4Q92889 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.3■□□□□ 0.36
ERCC4Q92889 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
ERCC4Q92889 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.3■□□□□ 0.36
ERCC4Q92889 Z92544.3-201ENST00000624747 417 ntBASIC17.3■□□□□ 0.36
ERCC4Q92889 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms