Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 KRT18P13-201ENST00000400056 1290 ntBASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 AC025678.2-201ENST00000562061 970 ntBASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ATG4AQ8WYN0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 TIMM17BP1-201ENST00000545713 516 ntBASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 AC092337.1-201ENST00000568699 1129 ntBASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 AL590560.3-201ENST00000623350 461 ntBASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
ATG4AQ8WYN0 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 CLK3P2-201ENST00000427566 1453 ntBASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 TSSK5P-201ENST00000423978 907 ntBASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 AC114501.2-201ENST00000439631 535 ntBASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 ZNF890P-202ENST00000530367 1156 ntBASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 AC015911.4-201ENST00000588022 1070 ntBASIC15.78■□□□□ 0.12
ATG4AQ8WYN0 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms