Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGB4Q8WW32 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
HMGB4Q8WW32 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 AL157414.3-201ENST00000624276 1954 ntBASIC15.2■□□□□ 0.02
HMGB4Q8WW32 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 RN7SL720P-201ENST00000488178 304 ntBASIC15.2■□□□□ 0.02
HMGB4Q8WW32 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 AC106794.1-201ENST00000506935 792 ntBASIC15.2■□□□□ 0.02
HMGB4Q8WW32 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 MIR4683-201ENST00000579659 81 ntBASIC15.2■□□□□ 0.02
HMGB4Q8WW32 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 KRT8P19-201ENST00000551916 1455 ntBASIC15.2■□□□□ 0.02
HMGB4Q8WW32 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
HMGB4Q8WW32 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 HINT2P1-201ENST00000419438 481 ntBASIC15.19■□□□□ 0.02
HMGB4Q8WW32 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 MESTP3-201ENST00000503460 968 ntBASIC15.19■□□□□ 0.02
HMGB4Q8WW32 AC026434.2-201ENST00000506094 1078 ntBASIC15.19■□□□□ 0.02
HMGB4Q8WW32 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 AL023803.2-201ENST00000620080 638 ntBASIC15.19■□□□□ 0.02
HMGB4Q8WW32 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms