Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 AL929302.1-201ENST00000426556 871 ntBASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 RPL35P9-201ENST00000446059 350 ntBASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 AP000322.3-201ENST00000608665 388 ntBASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 AC233280.19-201ENST00000633223 136 ntBASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 AC139713.2-207ENST00000641556 1292 ntBASIC9.9□□□□□ -0.82
ALMS1Q8TCU4 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
ALMS1Q8TCU4 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC9.9□□□□□ -0.83
ALMS1Q8TCU4 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
ALMS1Q8TCU4 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC9.9□□□□□ -0.83
ALMS1Q8TCU4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.83
ALMS1Q8TCU4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC9.9□□□□□ -0.83
ALMS1Q8TCU4 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC018638.5-201ENST00000450885 754 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 RNA5SP406-201ENST00000516106 112 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 EMC4-208ENST00000559078 599 ntTSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 CICP11-201ENST00000434745 2827 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 CR382285.1-201ENST00000625012 1485 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 DUX4L50-201ENST00000455245 715 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 RN7SL357P-201ENST00000581065 298 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AP000769.1-203ENST00000637245 208 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 RNLS-203ENST00000437752 525 ntTSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC113347.2-201ENST00000512350 279 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 AC110057.1-201ENST00000636031 898 ntBASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC9.89□□□□□ -0.83
ALMS1Q8TCU4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 AF274858.1-201ENST00000406288 372 ntBASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
ALMS1Q8TCU4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC9.88□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms