Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SMC1BQ8NDV3 AL513477.1-201ENST00000602865 2407 ntBASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 AC136759.1-202ENST00000530858 2194 ntBASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC17.83■□□□□ 0.45
SMC1BQ8NDV3 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 FTH1P22-201ENST00000456305 520 ntBASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 RPS23-204ENST00000507980 836 ntTSL 2 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 AC009560.1-201ENST00000620208 434 ntBASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SMC1BQ8NDV3 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 LINC01815-202ENST00000641468 1409 ntBASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 BANF1P3-201ENST00000412556 261 ntBASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 RPSAP15-201ENST00000448168 861 ntBASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 MIR5001-201ENST00000580185 100 ntBASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SMC1BQ8NDV3 MST1L-201ENST00000442552 2185 ntBASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 AC008894.3-201ENST00000624324 3103 ntBASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.81■□□□□ 0.44
SMC1BQ8NDV3 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms