Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 KRT8P35-201ENST00000483942 1338 ntBASIC16.55■□□□□ 0.24
VPS52Q8N1B4 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 ZNF767P-206ENST00000513792 565 ntBASIC16.55■□□□□ 0.24
VPS52Q8N1B4 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 C2orf69P2-201ENST00000562032 1123 ntBASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 BX539320.1-201ENST00000623759 877 ntBASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AC132938.4-201ENST00000623835 848 ntBASIC16.55■□□□□ 0.24
VPS52Q8N1B4 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AC068587.10-201ENST00000641210 219 ntBASIC16.55■□□□□ 0.24
VPS52Q8N1B4 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.55■□□□□ 0.24
VPS52Q8N1B4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.54■□□□□ 0.24
VPS52Q8N1B4 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
VPS52Q8N1B4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 AL138709.1-201ENST00000614840 1693 ntBASIC16.53■□□□□ 0.24
VPS52Q8N1B4 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 AHCYP2-201ENST00000430630 1300 ntBASIC16.53■□□□□ 0.24
VPS52Q8N1B4 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VPS52Q8N1B4 AC006033.1-201ENST00000440505 426 ntBASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms