Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.52□□□□□ -0.24
SKA3Q8IX90 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SKA3Q8IX90 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SKA3Q8IX90 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SKA3Q8IX90 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SKA3Q8IX90 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
SKA3Q8IX90 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SKA3Q8IX90 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.24
SKA3Q8IX90 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
SKA3Q8IX90 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 AC134915.1-201ENST00000426461 574 ntBASIC13.52□□□□□ -0.25
SKA3Q8IX90 GHSR-202ENST00000427970 912 ntBASIC13.52□□□□□ -0.25
SKA3Q8IX90 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 RPL13AP25-201ENST00000484130 612 ntBASIC13.52□□□□□ -0.25
SKA3Q8IX90 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 AC107373.2-201ENST00000607735 490 ntBASIC13.52□□□□□ -0.25
SKA3Q8IX90 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.52□□□□□ -0.25
SKA3Q8IX90 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SKA3Q8IX90 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.52□□□□□ -0.25
SKA3Q8IX90 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 INTS4P2-202ENST00000614726 2019 ntBASIC13.51□□□□□ -0.25
SKA3Q8IX90 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 CRB3P1-201ENST00000449338 276 ntBASIC13.51□□□□□ -0.25
SKA3Q8IX90 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 ELK1P1-201ENST00000485699 580 ntBASIC13.51□□□□□ -0.25
SKA3Q8IX90 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 TP53TG3HP-202ENST00000569755 579 ntBASIC13.51□□□□□ -0.25
SKA3Q8IX90 AC140912.1-201ENST00000577171 1054 ntBASIC13.51□□□□□ -0.25
SKA3Q8IX90 CTBP2P3-201ENST00000585629 1255 ntBASIC13.51□□□□□ -0.25
SKA3Q8IX90 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SKA3Q8IX90 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
SKA3Q8IX90 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms