Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC19.6■□□□□ 0.73
USP54Q70EL1 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC19.6■□□□□ 0.73
USP54Q70EL1 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
USP54Q70EL1 GMFG-209ENST00000600322 622 ntTSL 5 BASIC19.6■□□□□ 0.73
USP54Q70EL1 AC105137.3-201ENST00000617588 984 ntBASIC19.6■□□□□ 0.73
USP54Q70EL1 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
USP54Q70EL1 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC19.6■□□□□ 0.73
USP54Q70EL1 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.6■□□□□ 0.73
USP54Q70EL1 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
USP54Q70EL1 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC19.6■□□□□ 0.73
USP54Q70EL1 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
USP54Q70EL1 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC19.59■□□□□ 0.73
USP54Q70EL1 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.59■□□□□ 0.73
USP54Q70EL1 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC19.59■□□□□ 0.73
USP54Q70EL1 OR8T1P-201ENST00000421347 918 ntBASIC19.59■□□□□ 0.73
USP54Q70EL1 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC19.59■□□□□ 0.73
USP54Q70EL1 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC19.59■□□□□ 0.73
USP54Q70EL1 MIR6858-201ENST00000620733 67 ntBASIC19.59■□□□□ 0.73
USP54Q70EL1 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 AC138035.3-201ENST00000622706 2791 ntBASIC19.59■□□□□ 0.73
USP54Q70EL1 AL162727.3-201ENST00000635661 2787 ntBASIC19.59■□□□□ 0.73
USP54Q70EL1 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
USP54Q70EL1 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
USP54Q70EL1 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC19.59■□□□□ 0.73
USP54Q70EL1 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
USP54Q70EL1 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
USP54Q70EL1 PPP1R2P4-201ENST00000424051 595 ntBASIC19.59■□□□□ 0.73
USP54Q70EL1 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC19.59■□□□□ 0.73
USP54Q70EL1 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
USP54Q70EL1 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC19.59■□□□□ 0.73
USP54Q70EL1 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC19.59■□□□□ 0.73
USP54Q70EL1 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
USP54Q70EL1 MIR2392-201ENST00000584881 84 ntBASIC19.59■□□□□ 0.73
USP54Q70EL1 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
USP54Q70EL1 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
USP54Q70EL1 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC19.58■□□□□ 0.73
USP54Q70EL1 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
USP54Q70EL1 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC19.58■□□□□ 0.73
USP54Q70EL1 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
USP54Q70EL1 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.58■□□□□ 0.73
USP54Q70EL1 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
USP54Q70EL1 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.58■□□□□ 0.72
USP54Q70EL1 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP54Q70EL1 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
USP54Q70EL1 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP54Q70EL1 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
USP54Q70EL1 PARN-202ENST00000420015 2360 ntTSL 2 BASIC19.58■□□□□ 0.72
USP54Q70EL1 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC19.58■□□□□ 0.72
USP54Q70EL1 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC19.58■□□□□ 0.72
USP54Q70EL1 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC19.58■□□□□ 0.72
USP54Q70EL1 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC19.58■□□□□ 0.72
USP54Q70EL1 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC19.58■□□□□ 0.72
USP54Q70EL1 AC103810.10-201ENST00000606504 343 ntBASIC19.58■□□□□ 0.72
USP54Q70EL1 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
USP54Q70EL1 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC19.57■□□□□ 0.72
USP54Q70EL1 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
USP54Q70EL1 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC19.57■□□□□ 0.72
USP54Q70EL1 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC19.57■□□□□ 0.72
USP54Q70EL1 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC19.57■□□□□ 0.72
USP54Q70EL1 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 NUDT4P2-201ENST00000578341 546 ntBASIC19.57■□□□□ 0.72
USP54Q70EL1 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
USP54Q70EL1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms