Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 TSSK5P-201ENST00000423978 907 ntBASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 CD74-212ENST00000524315 584 ntTSL 5 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 API5-211ENST00000534695 560 ntTSL 5 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 AP005482.1-201ENST00000563722 1273 ntBASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 AGAP7P-201ENST00000582299 2062 ntBASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 AGAP14-201ENST00000624701 2060 ntBASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.74□□□□□ -0.37
PDLIM3Q53GG5 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 MROH4P-201ENST00000431302 1578 ntBASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 MIR193BHG-211ENST00000641433 5365 ntBASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 KRT223P-202ENST00000449164 1292 ntBASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 RN7SL219P-201ENST00000582872 296 ntBASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 APOC4-201ENST00000591600 348 ntTSL 3 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 AC133552.6-201ENST00000613406 534 ntBASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PDLIM3Q53GG5 FOXO1B-201ENST00000504678 1527 ntBASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PDLIM3Q53GG5 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms